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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;mso-fareast-language:EN-US">OK but then it does not match what you suggested previously<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;background:yellow;mso-highlight:yellow;mso-fareast-language:EN-US">Then, first subset will contain Mat(i=0,j=0,k=0), Mat(i=0,j=0,k=N), Mat(i=0,j=0,k=2*N),
… and the resulting subsets will be better balanced.</span><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext">Hälsningar / Best regards<br>
<br>
Michael</span><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif";color:windowtext;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-family:"Calibri",sans-serif"">From: </span>
</b><span style="font-family:"Calibri",sans-serif"">Castor-users <castor-users-bounces@lists.castor-project.org> on behalf of COMTAT Claude <claude.comtat@cea.fr><br>
<b>Date: </b>Wednesday, 26 April 2017 at 12:05<br>
<b>To: </b>"castor-users@lists.castor-project.org" <castor-users@lists.castor-project.org><br>
<b>Subject: </b>Re: [Castor-users] [Castor-devel] Fwd: Re: TR: SPECT reading Interfile<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:windowtext"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif";color:#1F497D">Remove the loop on the subsets, and try again:</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do J=1,mtxsizJ</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do I=1,mtxsizI</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do K=1,AllAngles</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">
</span><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif"">I1=I</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif""> J1=J</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif""> K1=(K-1)</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif"">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">Write(1) ITime,Mat(i1,j1,k1),</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> * (K1-1),MtxsizI*(J1-1)+(I1-1)</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma",sans-serif";color:windowtext">De :</span></b><span style="font-size:10.0pt;font-family:"Tahoma",sans-serif";color:windowtext"> Castor-devel [mailto:castor-devel-bounces@lists.castor-project.org]
<b>De la part de</b> Carlier Thomas<br>
<b>Envoyé :</b> mercredi 26 avril 2017 11:02<br>
<b>À :</b> castor-devel@lists.castor-project.org<br>
<b>Objet :</b> [Castor-devel] Fwd: Re: [Castor-users] TR: SPECT reading Interfile</span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
<p>Je regarde quand j'aurai le temps... Si certains veulent se lancer avant => pas de soucis !<o:p></o:p></p>
<p> <o:p></o:p></p>
<p>Thomas<o:p></o:p></p>
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<p class="MsoNormal"><br>
<br>
-------- Message transféré -------- <o:p></o:p></p>
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<p class="MsoNormal" align="right" style="text-align:right"><b>Sujet : </b><o:p></o:p></p>
</td>
<td style="padding:0cm 0cm 0cm 0cm">
<p class="MsoNormal">Re: [Castor-users] TR: SPECT reading Interfile<o:p></o:p></p>
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<p class="MsoNormal" align="right" style="text-align:right"><b>Date : </b><o:p></o:p></p>
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<td style="padding:0cm 0cm 0cm 0cm">
<p class="MsoNormal">Wed, 26 Apr 2017 08:59:17 +0000<o:p></o:p></p>
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<td nowrap="" valign="top" style="padding:0cm 0cm 0cm 0cm">
<p class="MsoNormal" align="right" style="text-align:right"><b>De : </b><o:p></o:p></p>
</td>
<td style="padding:0cm 0cm 0cm 0cm">
<p class="MsoNormal">Michael Ljungberg <a href="mailto:michael.ljungberg@med.lu.se">
<michael.ljungberg@med.lu.se></a><o:p></o:p></p>
</td>
</tr>
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<td nowrap="" valign="top" style="padding:0cm 0cm 0cm 0cm">
<p class="MsoNormal" align="right" style="text-align:right"><b>Pour : </b><o:p></o:p></p>
</td>
<td style="padding:0cm 0cm 0cm 0cm">
<p class="MsoNormal">Carlier Thomas <a href="mailto:thomas.carlier@chu-nantes.fr">
<thomas.carlier@chu-nantes.fr></a><o:p></o:p></p>
</td>
</tr>
</tbody>
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<p class="MsoNormal"><br>
<br>
<br>
<br>
<o:p></o:p></p>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">Note that I have written a conversion program from SPECT interfiles too castor format. According to our discussions
I create the *.cdf file from the fortran loop</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do M=1,Subsets
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do J=1,mtxsizJ</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do I=1,mtxsizI</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> Do K=1,IAngles</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">
</span><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif"">I1=I</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif""> J1=J</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif""> K1=(K-1)*Subsets+M</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif"">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="SV" style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">Write(1) ITime,Mat(i1,j1,k1),</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> * (K1-1),MtxsizI*(J1-1)+(I1-1)</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> EndDo</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">I hope this is write. Here is a zip file with the projections and the reconstructed images (three iterations and
data organised in 16 subsets)</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""><a href="https://www.dropbox.com/s/bjvtvs7sy17skmv/castor.zip?dl=0">https://www.dropbox.com/s/bjvtvs7sy17skmv/castor.zip?dl=0</a></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">Hälsningar / Best regards<br>
<br>
Michael</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-family:"Calibri",sans-serif"">From:
</span></b><span style="font-family:"Calibri",sans-serif"">Castor-users <a href="mailto:castor-users-bounces@lists.castor-project.org">
<castor-users-bounces@lists.castor-project.org></a> on behalf of Carlier Thomas <a href="mailto:thomas.carlier@chu-nantes.fr">
<thomas.carlier@chu-nantes.fr></a><br>
<b>Date: </b>Wednesday, 26 April 2017 at 10:26<br>
<b>To: </b><a href="mailto:castor-users@lists.castor-project.org">"castor-users@lists.castor-project.org"</a>
<a href="mailto:castor-users@lists.castor-project.org"><castor-users@lists.castor-project.org></a><br>
<b>Subject: </b>Re: [Castor-users] TR: SPECT reading Interfile</span><o:p></o:p></p>
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<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p>Dear Michael,<o:p></o:p></p>
<p> <o:p></o:p></p>
<p>Would it be possible to send us your projections and your log file for this reconstruction?<o:p></o:p></p>
<p>We will investigate the problem with your data because we did not experience such artifacts.<o:p></o:p></p>
<p>Thanks<o:p></o:p></p>
<p> <o:p></o:p></p>
<p>Thomas<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Le 26/04/2017 à 07:57, Michael Ljungberg a écrit :<o:p></o:p></p>
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<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">Hi Claude and others</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">I finally got it working for osem. Thank you for all help. I have noticed that when using a relatively low angles/subset
there appear artefacts in the images that is constant in position though out the number of slices. The example is for 8 angles/subsets. I will investigate effect this a little bit more. Is there any one that has seen this before?</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Verdana",sans-serif"">Hälsningar / Best regards<br>
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Michael</span><o:p></o:p></p>
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<pre>_______________________________________________<o:p></o:p></pre>
<pre>Castor-users mailing list<o:p></o:p></pre>
<pre><a href="mailto:Castor-users@lists.castor-project.org">Castor-users@lists.castor-project.org</a><o:p></o:p></pre>
<pre><a href="http://lists.castor-project.org/listinfo/castor-users">http://lists.castor-project.org/listinfo/castor-users</a><o:p></o:p></pre>
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