[Castor-users] Problems with –im (involuntary patient motion correction)
tmerlin
Thibaut.Merlin at univ-brest.fr
Tue Sep 22 10:24:50 CEST 2020
Hi Inge,
The building problem might come from the CMake configuration file, as
these projects have been relocated (now you must enable
CASToR_BUILD_SAMPLE_UTILITIES in cmake to build them). It should not
have caused issues to build the solution though, so I will have a closer
look at it.
Could you try to rebuild the 3.1 version with
CASToR_BUILD_SAMPLE_UTILITIES enabled ? Alternatively if there are still
some issues, you can use the configuration file from the previous
version in attachements (to replace the one in the castor directory).
Let me know if this helps
Kind regards,
Thibaut
On 22/09/2020 09:41, Schagt, I.H. van der wrote:
>
> Dear Zacharis,
>
>
> Thank you for your quick response.
>
> As for oDynamicDataManager, in the datafile header a start time and
> duration are indeed given, these are 0s and 900s respectively. even
> though these values are included, the frame time stop remains 0s when
> I apply motion correction without framing.
>
> I tried the new version of Castor (V3.1), but I have trouble with
> configuring and building te program. Configuring only creates four
> projects in the solution (all_build, *castor-recon*, install and
> zero_check) instead of seven projects (all_build, *castor-recon*,
> install, zero_check, *castor-datafileExplorer,
> castor-imageDynamicTools and castor-scannerLUTExplorer*) and this
> causes problems building the solution.
>
> As far as configuring and building is concerned, I did everything the
> same as with v_3.0.1. I configured Castor with CMake and tried to
> build it in Windows Visual Studio.
>
> Do you know if the problem with configuring and building could be with
> this new version?
>
>
> Kind regards,
>
> Inge
>
> ------------------------------------------------------------------------
> *Van:* Chalampalakis, Zacharias <zacharias.chalampalakis at kcl.ac.uk>
> *Verzonden:* maandag 21 september 2020 18:21:32
> *Aan:* Schagt, I.H. van der; castor-users at lists.castor-project.org
> *Onderwerp:* RE: Problems with –im (involuntary patient motion
> correction)
>
> Good afternoon Igne
>
> Thank you for your email.
>
> We actually just released a new version of CASToR ( V3.1 ) which fixed
> some bugs related to the handling of motion timestamps.
>
> Maybe you could try with this version , if it is not too difficult ,
> to check if the behaviour you experience is related to these bugs ?
>
> In the latest version , the /oDynamidDataManager/ will remove all
> timestamps that occur after the end of the last frame.
>
> Normally the duration of the frame ( even when not specifying framing
> ) is set by the *Start time (s) *and *Duration (s) *entries in the
> datafile header.
>
> Do you have these entries in your datafile header?
>
> Kind Regards,
>
> Zacharias Chalampalakis
>
> *From:*Castor-users <castor-users-bounces at lists.castor-project.org>
> *On Behalf Of *Schagt, I.H. van der
> *Sent:* Monday, September 21, 2020 4:33 PM
> *To:* castor-users at lists.castor-project.org
> *Subject:* [Castor-users] Problems with –im (involuntary patient
> motion correction)
>
> Dear all,
>
> I am having trouble with motion correction reconstruction when using
> the –im option. When I try to apply motion correction reconstruction I
> get the error:
>
> /Error, the 2th motion trigger timestamp: xxx occurs after the end of
> the last frame (frame 1, timestop: 0!/
>
> This error occurs in the code in the file /oDynamicDataManager/ line
> 413 and arises incorrectly. When I do –im reconstruction in
> combination with 1 frame (so no framing), the time stop value of the
> frame remains 0s, it is not read from the data file. As a result, the
> time steps of the motion triggers are greater than the time stop value
> of the frame (line 407) and you will eventually get an error. When I
> manually adjust this time stop value to the correct value myself, this
> error message goes away, but I get incorrect reconstructed images. I
> only get black images after reconstruction where each voxel has NaN as
> its value. When I apply the same motion correction where I also divide
> the data into, for example, 2 frames (-frm…), I get correctly
> reconstructed images.
>
> Does anyone of you know why the option –im gives these weird results,
> or what I maybe do wrong?
> I use list-mode PET data with a total duration of 900 seconds. For the
> motion correction, I used three motion triggers (and deformations).
>
> Thanks in advance!
>
> Inge
>
> ------------------------------------------------------------------------
>
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>
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--
Thibaut MERLIN -- PhD
Docteur en Imagerie Médicale au Laboratoire de Traitement de l'Information Medicale (LaTIM - INSERM UMR 1101)
Institut Brestois de recherche en Bio-Santé (IBRBS)
12 Avenue Foch, 29200 Brest, FRANCE
Tel: 06.75.12.24.90
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# MON 1 Aug 2016 17:02 PM CET
# Didier Benoit, didier.benoit13 at gmail.com
# Thibaut Merlin, thibaut.merlin at gmail.com
# CMAKE compiling the CASToR reconstruction software
#---------
# Checking the CMAKE version
cmake_minimum_required( VERSION 2.8 FATAL_ERROR )
#---------
# Set the build type
set( CMAKE_BUILD_TYPE "Release" CACHE STRING
"Choose the type of build, options are: Debug Release"
)
#---------
# Defining the project
project( CASToR )
set( CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake-modules
${CMAKE_MODULE_PATH}
)
#---------
# Defining a list of option
option( CASToR_64bits "Build CASToR on 64 bits architecture" YES )
option( CASToR_VERBOSE "Print lot of infos from CASToR" NO )
option( CASToR_DEBUG "Enable many additionnal checks in primitive functions" NO )
option( CASToR_BUILD_GATE_UTILITIES "Build GATE tools for CASToR (require ROOT library)" NO )
option( CASToR_BUILD_SAMPLE_UTILITIES "Build Example codes (require ROOT library)" NO )
option( CASToR_BUILD_DEVEL "Build devel tools. Must be left unchecked" NO )
option( CASToR_ROOT "Build CASToR with ROOT library" NO )
option( CASToR_SIMD "Build CASToR with SIMD OPTION" NO )
option( CASToR_OMP "Build CASToR with OMP" NO )
option( CASToR_MPI "Build CASToR with MPI" NO )
# For testing purposes
#option( CASToR_DEFORMATION_LEDESMA "Build CASToR with LEDESMA" NO )
#option( CASToR_ELASTIX "Build CASToR with ELASTIX" NO )
#---------
# Find the config file CASToR config
find_path( CASTOR_CONFIG_DIR oCASToRConfig.hh.in
${PROJECT_SOURCE_DIR}
${PROJECT_SOURCE_DIR}/include/algorithm
${PROJECT_SOURCE_DIR}/include/analytic_simulator
${PROJECT_SOURCE_DIR}/include/datafile
${PROJECT_SOURCE_DIR}/include/dynamic
${PROJECT_SOURCE_DIR}/include/image
${PROJECT_SOURCE_DIR}/include/management
${PROJECT_SOURCE_DIR}/include/optimizer
${PROJECT_SOURCE_DIR}/include/projector
${PROJECT_SOURCE_DIR}/include/scanner
${PROJECT_SOURCE_DIR}/include/utils
)
#---------
# Defining configuration files
configure_file(
"${CASTOR_CONFIG_DIR}/oCASToRConfig.hh.in"
"${PROJECT_BINARY_DIR}/oCASToRConfig.hh"
@ONLY
)
#---------
# Setting the CASTOR_CONFIG variable
set( CASTOR_CONFIG ${PROJECT_SOURCE_DIR}/config CACHE PATH
"Path to the CASTOR config repository"
)
#---------
# Setting position of the CASToR utilitaries
set( TOOLKITS_SOURCE_DIR ${PROJECT_SOURCE_DIR}/toolkits )
# To avoid conflict between the makefile from CMake and the makefile provided
# by CASToR
add_definitions( -DCASToR_USE_CMAKE )
########################################################################
# Provide add_compile_options() when not available
########################################################################
if( CMAKE_VERSION VERSION_LESS "2.8.12" )
function( add_compile_options )
add_definitions( ${ARGN} )
endfunction( add_compile_options )
endif()
#---------
# Different option for Windows or Unix (Linux/MacOS)
if( WIN32 )
#---------
# Delete some flags by default provided by CMAKE
#---------
string( REPLACE "/W3" "" CMAKE_CXX_FLAGS ${CMAKE_CXX_FLAGS} )
string( REPLACE "/O2" "" CMAKE_CXX_FLAGS_RELEASE ${CMAKE_CXX_FLAGS_RELEASE} )
string( REPLACE "/DNDEBUG" "" CMAKE_CXX_FLAGS_RELEASE
${CMAKE_CXX_FLAGS_RELEASE}
)
string( REPLACE "/MD" "" CMAKE_CXX_FLAGS_RELEASE ${CMAKE_CXX_FLAGS_RELEASE} )
string( REPLACE "/O2" "" CMAKE_CXX_FLAGS_RELEASE ${CMAKE_CXX_FLAGS_RELEASE} )
# Visual studio flags by default /Ox
add_compile_options( /MP )
#---------
# Checking for OpenMP
if( CASToR_OMP )
find_package( OpenMP REQUIRED )
set( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}" )
set( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}" )
set( CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}
${OpenMP_EXE_LINKER_FLAGS}"
)
add_definitions( /DCASTOR_OMP )
endif()
#---------
# Checking for MPI
if( CASToR_MPI )
set( MPIEXEC "C:/Program Files/Microsoft MPI/Bin/mpiexec.exe" )
set( MPI_CXX_INCLUDE_PATH
"C:/Program Files (x86)/Microsoft SDKs/MPI/Include"
)
if( "${CMAKE_SIZEOF_VOID_P}" EQUAL 8 )
set( MS_MPI_ARCH_DIR x64 )
else()
set( MS_MPI_ARCH_DIR x86 )
endif()
set( MPI_CXX_LIBRARIES
"C:/Program Files (x86)/Microsoft SDKs/MPI/Lib/${MS_MPI_ARCH_DIR}/msmpi.lib"
)
set( MPI_C_INCLUDE_PATH "${MPI_CXX_INCLUDE_PATH}" )
set( MPI_C_LIBRARIES "${MPI_CXX_LIBRARIES}" )
set( MPIEXEC_NUMPROC_FLAG "-np" CACHE STRINGS
"Flag used by MPI to specify the number of processes for MPIEXEC; the next option will be the number of processes."
)
include_directories( ${MPI_CXX_INCLUDE_PATH} )
add_definitions( /DCASTOR_MPI )
endif()
#---------
# Checking verbosity
if( CASToR_VERBOSE )
add_compile_options( /W4 )
add_definitions( /DCASTOR_VERBOSE )
endif()
#---------
# Checking debug
if( CASToR_DEBUG )
add_compile_options( /W4 )
add_definitions( /DCASTOR_DEBUG )
endif()
#---------
# Checking the mode Release/Debug
if( CMAKE_BUILD_TYPE MATCHES Release ) # Release mode
# Add release flags
add_compile_options( /Ox /O2 )
else() # Debug mode
# Add debug flags
add_compile_options( /Od )
add_definitions( /DCASTOR_DEBUG )
endif()
#---------
# Checking for ROOT
if( CASToR_ROOT )
find_package( ROOT REQUIRED )
include_directories( ${ROOT_INCLUDE_DIR} )
set( LINK_DIRECTORIES ${ROOT_LIBRARY_DIR} )
add_definitions( -DCASTOR_ROOT )
endif()
#---------
# GATE utilities
if( CASToR_BUILD_GATE_UTILITIES )
if(CASToR_ROOT)
else()
message( "CASToR_ROOT switched to ON (ROOT required for GATE utilities) ${CMAKE_MODULE_PATH}" )
set( ROOT_INCLUDE_DIR $ENV{ROOT_INCLUDE_DIR} )
set( ROOT_LIBRARY_DIR $ENV{ROOT_LIBRARY_DIR} )
include_directories( $ENV{ROOT_INCLUDE_DIR} )
set( LINK_DIRECTORIES ${ROOT_LIBRARY_DIR} )
add_definitions( /DCASTOR_ROOT )
set( CASToR_ROOT ON CACHE BOOL "Force ROOT linking" FORCE)
endif()
endif()
#---------
# Checking for ROOT
if( CASToR_BUILD_SAMPLE_UTILITIES )
if(CASToR_ROOT)
else()
message( "CASToR_ROOT switched to ON (ROOT required for sample code utilities)" )
set( ROOT_INCLUDE_DIR $ENV{ROOT_INCLUDE_DIR} )
set( ROOT_LIBRARY_DIR $ENV{ROOT_LIBRARY_DIR} )
include_directories( $ENV{ROOT_INCLUDE_DIR} )
set( LINK_DIRECTORIES ${ROOT_LIBRARY_DIR} )
add_definitions( /DCASTOR_ROOT )
set( CASToR_ROOT ON CACHE BOOL "Force ROOT linking" FORCE)
endif()
endif()
# Checking for both ROOT & 64bits enabled
# Force to 32 bits in this case, as ROOT can only be 32 bits on WIN
# https://root-forum.cern.ch/t/native-windows-64-bit-build/9102/27
# Display warning message
#---------
# Checking the architecture 64/32 bits
if( CASToR_64bits )
if( CASToR_ROOT )
message( "Architecture set to 32 bits as ROOT can only be built as 32 bits !" )
message( "The generator may have to be manually changed to a 32 bits version !" )
set( CASToR_64bits OFF CACHE BOOL "" FORCE)
else()
add_definitions( /D_64 )
endif()
endif()
# Unix fork (Linux/MacOS)
else()
#---------
# Compiler-specific C++11 activation.
if( "${CMAKE_CXX_COMPILER_ID}" MATCHES "GNU" )
execute_process(
COMMAND ${CMAKE_CXX_COMPILER} -dumpversion OUTPUT_VARIABLE GCC_VERSION
)
if( NOT( GCC_VERSION VERSION_GREATER 4.7 OR GCC_VERSION VERSION_EQUAL 4.7 ) )
message( FATAL_ERROR "${PROJECT_NAME} requires g++ 4.7 or greater." )
endif()
add_compile_options( -std=c++11 )
elseif( "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang" )
add_compile_options( -std=c++11 -stdlib=libc++ )
endif ()
#---------
# Checking the architecture 64/32 bits
if( CASToR_64bits )
add_compile_options( -m64 )
add_definitions( -D_64 )
else()
add_compile_options( -m32 )
endif()
#---------
# Checking verbosity
if( CASToR_VERBOSE )
add_compile_options( -Wall -pedantic -Wextra )
add_definitions( -DCASTOR_VERBOSE )
if( CASToR_SIMD )
add_compile_options( -ftree-vectorizer-verbose=2 )
endif()
endif()
#---------
# Checking debug
if( CASToR_DEBUG )
add_compile_options( -Wall -pedantic -Wextra )
add_definitions( -DCASTOR_DEBUG )
if( CASToR_SIMD )
add_compile_options( -ftree-vectorizer-verbose=2 )
endif()
endif()
#---------
# Checking for OpenMP
if( CASToR_OMP )
find_package( OpenMP REQUIRED )
add_compile_options( ${OpenMP_CXX_FLAGS} )
add_definitions( -DCASTOR_OMP )
endif()
#---------
# Checking for MPI
if( CASToR_MPI )
find_package( MPI REQUIRED )
include_directories( ${MPI_INCLUDE_PATH} )
add_definitions( -DCASTOR_MPI )
endif()
if( CASToR_BUILD_GATE_UTILITIES )
if(CASToR_ROOT)
else()
message( "CASToR_ROOT switched to ON (ROOT required for GATE utilities)" )
set( ROOT_INCLUDE_DIR $ENV{ROOT_INCLUDE_DIR} )
set( ROOT_LIBRARY_DIR $ENV{ROOT_LIBRARY_DIR} )
include_directories( $ENV{ROOT_INCLUDE_DIR} )
set( LINK_DIRECTORIES ${ROOT_LIBRARY_DIR} )
add_definitions( /DCASTOR_ROOT )
set( CASToR_ROOT ON CACHE BOOL "Force ROOT linking" FORCE)
endif()
endif()
#---------
# Checking for ROOT
if( CASToR_BUILD_SAMPLE_UTILITIES )
if(CASToR_ROOT)
else()
message( "CASToR_ROOT switched to ON (ROOT required for sample code utilities)" )
set( ROOT_INCLUDE_DIR $ENV{ROOT_INCLUDE_DIR} )
set( ROOT_LIBRARY_DIR $ENV{ROOT_LIBRARY_DIR} )
include_directories( $ENV{ROOT_INCLUDE_DIR} )
set( LINK_DIRECTORIES ${ROOT_LIBRARY_DIR} )
add_definitions( /DCASTOR_ROOT )
set( CASToR_ROOT ON CACHE BOOL "Force ROOT linking" FORCE)
endif()
endif()
#---------
# Checking for ROOT
if( CASToR_ROOT )
find_package( ROOT REQUIRED )
include_directories( ${ROOT_INCLUDE_DIR} )
set( LINK_DIRECTORIES ${ROOT_LIBRARY_DIR} )
message( "${ROOT_INCLUDE_DIR} " ${ROOT_INCLUDE_DIR})
message( "${ROOT_LIBRARY_DIR} " ${ROOT_LIBRARY_DIR})
add_definitions( -DCASTOR_ROOT )
endif()
#--------- // LEDESMA deformation library. Not planned to be included in Castor, just for private testing.
# Checking for LEDESMA
#if( CASToR_DEFORMATION_LEDESMA )
# include_directories( ${PROJECT_SOURCE_DIR}/include/image/lib )
# set( LINK_DIRECTORIES ${PROJECT_SOURCE_DIR}/include/image/lib -lElasticRegistration)
# set( DEFORMATION_LEDESMA_LIBRARIES -L${PROJECT_SOURCE_DIR}/include/image/lib\ -lElasticRegistration)
# add_definitions( -DCASTOR_DEFORMATION_LEDESMA )
#endif()
#---------
# Checking for ELASTIX
#if( CASToR_ELASTIX )
# set( ELASTIX_BUILD_DIR "" CACHE PATH "Path to elastix build folder" )
# set( ELASTIX_USE_FILE ${ELASTIX_BUILD_DIR}/UseElastix.cmake )
# option( USE_ITK_FOR_ELASTIX "Use ITK (required for elastix)" ON )
# find_package( ITK )
# if( ITK_FOUND )
# include( ${ITK_USE_FILE} )
# else( ITK_FOUND )
# message( FATAL_ERROR "Cannot build CASToR using ELASTIX without ITK. Please set ITK_DIR." )
# endif( ITK_FOUND )
# if( EXISTS ${ELASTIX_USE_FILE} )
# include( ${ELASTIX_USE_FILE} )
# link_libraries( param )
# link_libraries( elastix )
# link_libraries( transformix )
# add_definitions( -DCASTOR_ELASTIX )
# endif()
#endif()
#---------
# Checking the mode Release/Debug
if( CMAKE_BUILD_TYPE MATCHES Release ) # Release mode
# Add release flags
add_compile_options( -O3 )
# Add SIMD flags
if( CASToR_SIMD )
add_compile_options(
-ftree-vectorize -msse2 -fassociative-math
)
endif()
else() # Debug mode
# Add debug flags
add_compile_options( -O0 -g3 -fno-inline -pg )
add_definitions( -DCASTOR_DEBUG )
endif()
endif()
#---------
# Setup include directory for this project
include_directories(
${CMAKE_CURRENT_BINARY_DIR}
${PROJECT_SOURCE_DIR}/include/algorithm
${PROJECT_SOURCE_DIR}/include/analytic_simulator
${PROJECT_SOURCE_DIR}/include/datafile
${PROJECT_SOURCE_DIR}/include/dynamic
${PROJECT_SOURCE_DIR}/include/image
${PROJECT_SOURCE_DIR}/include/management
${PROJECT_SOURCE_DIR}/include/optimizer
${PROJECT_SOURCE_DIR}/include/projector
${PROJECT_SOURCE_DIR}/include/scanner
${PROJECT_SOURCE_DIR}/include/utils
)
#---------
# Locate sources and headers for CASToR
file( GLOB_RECURSE sources ${PROJECT_SOURCE_DIR}/src/*.cc )
file( GLOB_RECURSE headers ${PROJECT_SOURCE_DIR}/include/*.hh )
#---------
# Build the executables
add_executable( castor-recon castor-recon.cc ${sources} ${headers} )
add_executable( castor-datafileExplorer ${TOOLKITS_SOURCE_DIR}/castor-datafileExplorer.cc ${sources} ${headers} )
add_executable( castor-scannerLUTExplorer ${TOOLKITS_SOURCE_DIR}/castor-scannerLUTExplorer.cc ${sources} ${headers} )
add_executable( castor-imageDynamicTools ${TOOLKITS_SOURCE_DIR}/castor-imageDynamicTools.cc ${sources} ${headers} )
if( CASToR_BUILD_DEVEL)
add_executable( castor-proj castor-proj.cc ${sources} ${headers} )
endif()
# Build GATE tools for CASToR
if( CASToR_BUILD_GATE_UTILITIES )
add_executable( castor-GATERootToCastor ${TOOLKITS_SOURCE_DIR}/castor-GATERootToCastor.cc ${sources} ${headers} )
add_executable( castor-GATEMacToGeom ${TOOLKITS_SOURCE_DIR}/castor-GATEMacToGeom.cc ${sources}
${headers} )
endif()
# Build GATE tools for CASToR
if( CASToR_BUILD_SAMPLE_UTILITIES )
add_executable( castor-PetScannerLutEx ${TOOLKITS_SOURCE_DIR}/castor-PetScannerLutEx.cc ${sources} ${headers} )
add_executable( castor-datafileConversionEx ${TOOLKITS_SOURCE_DIR}/castor-datafileConversionEx.cc ${sources}
${headers} )
endif()
if( WIN32 )
target_link_libraries( castor-recon ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
target_link_libraries( castor-datafileExplorer ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
target_link_libraries( castor-scannerLUTExplorer ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
target_link_libraries( castor-imageDynamicTools ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
if( CASToR_BUILD_DEVEL )
target_link_libraries( castor-proj ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
endif()
if( CASToR_BUILD_GATE_UTILITIES )
target_link_libraries( castor-GATERootToCastor ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
target_link_libraries( castor-GATEMacToGeom ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
endif()
if( CASToR_BUILD_SAMPLE_UTILITIES )
target_link_libraries( castor-PetScannerLutEx ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
target_link_libraries( castor-datafileConversionEx ${ROOT_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${MPI_CXX_LIBRARIES}
)
endif()
else()
target_link_libraries( castor-recon ${ROOT_LIBRARIES} ${OpenMP_CXX_FLAGS} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} )
target_link_libraries( castor-datafileExplorer ${ROOT_LIBRARIES} ${OpenMP_CXX_FLAGS} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} )
target_link_libraries( castor-scannerLUTExplorer ${ROOT_LIBRARIES} ${OpenMP_CXX_FLAGS} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} )
target_link_libraries( castor-imageDynamicTools ${ROOT_LIBRARIES} ${OpenMP_CXX_FLAGS} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES}
)
if( CASToR_BUILD_DEVEL )
target_link_libraries( castor-proj ${ROOT_LIBRARIES} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${OpenMP_CXX_FLAGS}
)
endif()
if( CASToR_BUILD_GATE_UTILITIES )
target_link_libraries( castor-GATERootToCastor ${ROOT_LIBRARIES} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${OpenMP_CXX_FLAGS}
)
target_link_libraries( castor-GATEMacToGeom ${ROOT_LIBRARIES} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${OpenMP_CXX_FLAGS}
)
endif()
if( CASToR_BUILD_SAMPLE_UTILITIES )
target_link_libraries( castor-PetScannerLutEx ${ROOT_LIBRARIES} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${OpenMP_CXX_FLAGS}
)
target_link_libraries( castor-datafileConversionEx ${ROOT_LIBRARIES} ${MPI_LIBRARIES}
${DEFORMATION_LEDESMA_LIBRARIES} ${ITK_LIBRARIES} ${OpenMP_CXX_FLAGS}
)
endif()
endif()
#---------
# Move the executables to the install path
install( TARGETS
castor-recon castor-datafileExplorer castor-scannerLUTExplorer castor-imageDynamicTools
DESTINATION
bin
)
if( CASToR_BUILD_DEVEL )
install( TARGETS
castor-proj
DESTINATION
bin
)
endif()
if( CASToR_BUILD_GATE_UTILITIES )
install( TARGETS
castor-GATERootToCastor castor-GATEMacToGeom
DESTINATION
bin
)
endif()
if( CASToR_BUILD_SAMPLE_UTILITIES )
install( TARGETS
castor-PetScannerLutEx castor-datafileConversionEx
DESTINATION
bin
)
endif()
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