[Castor-users] Reading Interfile with ImageJ

[Maxime Toussaint]

Thank you very much for the plugin!

About Amide: There is a workaround presented in [1] which provide a link to a fork from Amide (see [2]). I am able to open Interfile with the Amide compiled from [2] but it was unstable (Amide refused to open new images after a while). Most likely, it is due to some error on my part in the compilation, but it is good to know that it is not plug&play.

Bests,
Maxime Toussaint

[1] https://sourceforge.net/p/amide/mailman/message/37614987/
[2] https://github.com/ferdymercury/amide


________________________________
De : Thibaut Merlin <Thibaut.Merlin at univ-brest.fr>
Envoyé : 21 mars 2022 20:29
À : Maxime Toussaint <Maxime.Toussaint at usherbrooke.ca>
Cc : castor-users at lists.castor-project.org <castor-users at lists.castor-project.org>
Objet : Re: [Castor-users] Reading Interfile with ImageJ


Hi Maxime,

I uploaded it on the website, you can now find it here https://castor-project.org/sites/default/files/2022-03/NucMed_TP.zip

Many thanks for your explanations about 3), I ran into it no later than a few weeks ago and it was mystifying me.. glad to know a patch is on the way!

Best,
Thibaut

Maxime Toussaint <Maxime.Toussaint at usherbrooke.ca<mailto:Maxime.Toussaint at usherbrooke.ca>> a écrit :

Greetings,

In the CASToR website, it is indicated that Interfile can be opened with ImageJ by using the NucMed plugin [1]. However, I can't seems to find this plugin. The closest I found was MedNuc [2], but it doesn't seems to mention that it can open Interfile. I did install its 8 plugins just to make sure, but I didn't found an option for loading Interfile. Can anyone tell me where to find this plugin or if it is really in MedNuc? (I hope I am not blind!)

I can open directly the *.img as Raw, but it would be easier and faster if it would open directly from the *.hdr.

Note: While being on the subject, the "current" version of Amide (for ubuntu 20.04) has some problems reading Interfile (It ignore Endian-ess) [3]. If anyone also have this problem, it seems that a corrected version might be coming in a near future [3].

Bests,
Maxime Toussaint

[1] https://castor-project.org/links<https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcastor-project.org%2Flinks&data=04%7C01%7CMaxime.Toussaint%40usherbrooke.ca%7Cc5925c5f46b944776c5f08da0b9b0e32%7C3a5a8744593545f99423b32c3a5de082%7C0%7C0%7C637835058300707385%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=6xzTiS4JMJiSV50pRjTs4FpRITTKp1VzN95TlOPCpRE%3D&reserved=0>
[2] https://person.dibris.unige.it/bertero-mario/MedNuc/<https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fperson.dibris.unige.it%2Fbertero-mario%2FMedNuc%2F&data=04%7C01%7CMaxime.Toussaint%40usherbrooke.ca%7Cc5925c5f46b944776c5f08da0b9b0e32%7C3a5a8744593545f99423b32c3a5de082%7C0%7C0%7C637835058300707385%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=xtiMLCdh%2Fws5scY1i4G45vJkC2s2bBpjImXcb0axnGQ%3D&reserved=0>
[3] https://sourceforge.net/p/amide/mailman/amide-users/thread/b12bea72-30ce-918d-fbae-a52c38fa9cad%40libero.it/#msg37622998<https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsourceforge.net%2Fp%2Famide%2Fmailman%2Famide-users%2Fthread%2Fb12bea72-30ce-918d-fbae-a52c38fa9cad%2540libero.it%2F%23msg37622998&data=04%7C01%7CMaxime.Toussaint%40usherbrooke.ca%7Cc5925c5f46b944776c5f08da0b9b0e32%7C3a5a8744593545f99423b32c3a5de082%7C0%7C0%7C637835058300707385%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=%2FxBkYWOM7SiPeirtxVMTATVDSzR1q7oe3st0B8V4tpE%3D&reserved=0>



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