[Castor-users] Error in running example benchmark

[Thibaut Merlin]

  Dear Suguru,

If you still encounter the issue:
It looks like the software couldn't find the directory containing the
CASToR configuration file, in particular the geometry file. Using the
Makefile, the environnement variable CASTOR_CONFIG must be sent to the
config directory before running the benchmark. The location looks like to
be home/gate/castor_v3.0.1/config/ in your case.

Hope this helps,
Thibaut

Suguru Katsube <sug.katsu at gmail.com> a écrit :

> Hi all,        
>    I'm beginner of CASToR. I installed CASToR in virtual machine (ubuntu
> 18.04.2) and compiled CASToR using the provided Makefile.
>    After that, I tried to reconstruct example
> (castor_benchmark_v3_pet_list-mode)
>    I got the following error
>     
>    [354] 09:23 vgate:~/Desktop/castor_benchmark_v3_pet_list-mode >
> ./run_benchmark_pet_list-mode_unix.sh
>
==============================================================================================
> Reconstruction is going on. Should take from one to several minutes
> depending on the hardware.
>
==============================================================================================
> sOutputManager::InitOutputDirectory() -> Output path is
> 'benchmark_pet_list-mode_challenger'
> castor-recon() -> Launch reconstruction from CASToR version 3.0.1.
> ***** sScannerManager::GetAvailableScanners() -> Could not open the
> repository directory at:
>
/usr/share/cern/root-install/bin:/usr/share/geant4/geant4-install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/share/gate/Gate-install/bin:/home/gate/castor_v3.0.1/bin:/home/gate/castor_v3.0.1/config/scanner/
> ***** sScannerManager::FindScannerSystem() -> A problem occurred while
> recovering scanner names from the scanner repository !
> ***** castor-recon() -> A problem occurred while searching for scanner
> system !
> ***** Exit function called. Abort with code 1.
>
==============================================================================================
> Check benchmark results (compare sensitivity image with the reference
one)
>
==============================================================================================
> ***** Input header file
> 'benchmark_pet_list-mode_challenger_sensitivity.hdr' is missing or
> corrupted !
>
>
==============================================================================================
> Check benchmark results (compare reconstructed image with the reference
> one)
>
==============================================================================================
> ***** Input header file 'benchmark_pet_list-mode_challenger_it2.hdr' is
> missing or corrupted !
>         
>      
>     How can I clear the error ? Any advice are appreciated.
>      
>     Best regards, 
>      
>     Suguru Katsube
>     Kyushu university
> --
>
> ○●----------------------------------------------------------●○
>           　勝部　俊（Suguru Katsube）
>
>            　九州大学大学院医学系学府保健学専攻
>
>            　医用量子線科学分野　修士課程1年
>
>             
>
>            　Medical Quantum Radiation Science Course,
>
>            　Department of Health Sciences,
>
>            　Graduate School of Medical Sciences, 
>
>            　Kyushu University, Fukuoka, Japan
>
>            　E-mail: sug.katsu at gmail.com[1]
>
>
○●----------------------------------------------------------●○



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