[Castor-users] "killed" message after some days run

[Hadi Rezaei]

Thank you so much.

On Tue, Jul 7, 2020 at 2:21 PM FILIPOVIC PIERUCCI Marina <
Marina.FILIPOVICPIERUCCI at cea.fr> wrote:

> See
>
> castor-recon -help-in
>
> There is the -sens option, to which you should provide the sensitivity
> image header
> ------------------------------
> *De :* Hadi Rezaei [hrezaei.m.ph at gmail.com]
> *Envoyé :* mardi 7 juillet 2020 11:41
> *À :* FILIPOVIC PIERUCCI Marina
> *Cc :* castor-users at lists.castor-project.org
> *Objet :* Re: [Castor-users] "killed" message after some days run
>
> Hi Marina
> Thank you for responding.
> How can I relaunch it without recomputing sensitivity?
> Thank you
>
> On Tue, Jul 7, 2020 at 1:57 PM FILIPOVIC PIERUCCI Marina <
> Marina.FILIPOVICPIERUCCI at cea.fr> wrote:
>
>> Hi,
>>
>> I would say that the kill should not be directly related to CASToR
>> execution, as the kill is an operation performed by the operating system or
>> the user. Your sensitivity image is really big, which might explain the
>> time, but you can relaunch your recon with the computed sensitivity image
>> given in input, so as not to calculate it again.
>>
>> Best
>>
>> Marina
>> ------------------------------
>> *De :* Castor-users [castor-users-bounces at lists.castor-project.org] de
>> la part de Hadi Rezaei [hrezaei.m.ph at gmail.com]
>> *Envoyé :* mardi 7 juillet 2020 11:17
>> *À :* castor-users at lists.castor-project.org
>> *Objet :* [Castor-users] "killed" message after some days run
>>
>> Dear CASToR users
>> I ran a program but after some days I found "killed" message and only
>> sensitivity.img has produced. What is the reason for this error? I used
>> CASTOR_v3
>> Did anyone face the same error?
>> Thank you
>> Best,
>>
>> ./castor-recon -df TBderenzo_df.Cdh -dout TBderenzo -opti MLEM -it 3:10
>> -th 8 -proj joseph -conv gaussian,4.,4.5,3.5::psf -dim 280,280,1344
>>
>> sOutputManager::InitOutputDirectory() -> Output path is 'TBderenzo'
>> castor-recon() -> Launch reconstruction from CASToR version 3.0.1.
>> sScannerManager::Initialize() -> From scanner TBderenzo
>> oProjectorManager::Initialize() -> Initialize projectors and projection
>> lines
>> ----- Dynamic model: No parameters given - setting diagonal basis
>> functions !
>> oOptimizerManager::Initialize() -> Initialize optimizer and penalty
>> oImageConvolverManager::Initialize() -> Initialize image convolvers
>> oSensitivityGenerator::Launch() -> Start the sensitivity computation
>>  --> Time spent for sensitivity generation | User: 276500 sec | CPU:
>> 2.1842655e+06 sec
>> sChronoManager::Initialize() -> Initialize all duration counters for
>> profiling
>> vAlgorithm::IterateCPU() -> Start algorithm for 3 iterations
>> vAlgorithm::IterateCPU() -> Start iteration 1/3 subset 1/10
>> killed
>>
>
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