[Castor-users] CasToR Benchmark test

[Fedor Goncharov]

Dear Xinjie Cao,

Thanks for the response. I run the bash script which is given in the
benchmark archive (PET benchmark histogram
<http://www.castor-project.org/files/castor/castor_2.0/castor_benchmark_v2_pet_histogram.zip>)

downloaded from the official CaSToR website:
http://www.castor-project.org/benchmarksv2

I just attach the bash script which I run, tell me if this helps.

Best,
Fedor



сб, 4 июл. 2020 г. в 07:18, Xinjie Cao <xinjie.cao at stonybrook.edu>:

> Hi Fedor,
>
> Would you mind sending your CASToR recon command with your question? That
> will make it easy to help you.
>
> Best
>
> On Fri, Jul 3, 2020 at 6:00 PM Fedor Goncharov <
> fedor.goncharov.ol at gmail.com> wrote:
>
>> Hello everyone and CasToR team,
>>
>> I am just a beginner for using CasToR, so I have a simple question
>> (maybe there is a better mailing list for my question).
>>
>> I have CasTOR v.2.1, compiled with a Make file under Linux Mint
>> with an MPI flag. I try to run a benchmark PET-benchmark-histogram v2,
>> and I get the following error:
>>
>>
>> ==============================================================================================
>> Reconstruction is going on. Should take from one to several minutes
>> depending on the hardware.
>>
>> ==============================================================================================
>> sOutputManager::InitOutputDirectory() -> Output path is
>> 'benchmark_pet_histogram_challenger'
>> castor-recon() -> Launch reconstruction from CASToR version 2.1.
>> sScannerManager::BuildScannerObject() -> Start building
>> sScannerManager::InstantiateScanner() -> Instantiate the scanner geometry
>> structure
>> iScannerPET::Instantiate() -> Create scanner structure and read
>> parameters from configuration file
>> sScannerManager::GetGeometricInfoFromDataFile() -> Look for acquisition
>> specific settings into datafile header
>> sScannerManager::BuildLUT() -> Generate the geometric Look-Up Table
>> iScannerPET::BuildLUT() -> Build LUT for scanner elements coordinates and
>> orientations
>> sScannerManager::Initialize() -> From scanner PET_GE_SIGNA_PET-MR
>> iScannerPET::Initialize() -> Initialize remaining stuff for scanner to be
>> ready
>> ***** oImageDimensionsAndQuantification::CheckParameters() -> Should
>> provide a strictly positive number of threads !
>> ***** The following error message was issued by MPI instance 0
>> ***** castor-recon() -> A problem occurred while checking image
>> dimensions parameters !
>> ***** Exit function called. Abort with code 1.
>>
>>
>> ==============================================================================================
>> Check benchmark results (compare reconstructed image with the reference
>> one)
>>
>> ==============================================================================================
>> ***** Input header file 'benchmark_pet_histogram_challenger_it2.hdr' is
>> missing or corrupted !
>>
>> Could one help to find the reason for this error and how to fix it?
>> I am not sure that MPI is really on. is there is a command to check with
>> witch flags my CasToR
>> compiled?
>>
>> Best,
>> Fedor
>>
>> _______________________________________________
>> Castor-users mailing list
>> Castor-users at lists.castor-project.org
>> http://lists.castor-project.org/listinfo/castor-users
>>
>
>
> --
> *....................................................*
> *Xinjie Cao*
> *M.E. / Ph.D. student*
> *Research Project Assistant*
> *Department of Electrical and Computer Engineering & Radiology *
> *Novel Medical Imaging Technologies Lab*
> *Health Science Center Level 8*
> *Stony Brook, NY 11794-8460 *
> *Tel: +1 (631)202-9445*
> you.stonybrook.edu/goldan/people/
> *email: **xinjie.cao at stonybroo*k.edu <xinjie.cao at stonybrook.edu>
>
>
> *....................................................*
> It is prohibited to distribute or publish the files attached to any other
> people unless you get permission from the writer himself. All rights
> reserved.
>
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